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Use the module name hisat2 to discover versions available and to load the application.

Multicore:

Both the hisat2 and hisatgenotype The hisat2 command can run across multiple threads using the --threads option.

See the help for further details e.g. hisat2 --help.

hisat-genotype

We also provide this related tool as a module: hisat-genotype.

The hisatgenotype command can run across multiple threads using the --threads option.

Please see See the help for the specific tool’s command for further details e.g. hisat2 / hisatgenotype --help.

Note

On Beartooth, this was automatically loading with hisat2.

On MedicineBow, this is now a separate module.