PLINK: is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
Use the module name plink
to discover versions available and to load the application.
Looking at the --help documentation:
[]$ plink --help ... --threads <val> : Set maximum number of concurrent threads. This has one known limitation: some BLAS/LAPACK linear algebra operations are multithreaded in a way that PLINK cannot control. If this is problematic, you should recompile against single-threaded BLAS/LAPACK. ... |
We would suggest setting this value to the cpus-per-task
value you set in your sbatch
script or salloc
request.