Bam-readcount

Overview

• GitHub: a utility that runs on a BAM or CRAM file and generates low-level information about sequencing data at specific nucleotide positions. Its outputs include observed bases, readcounts, summarized mapping and base qualities, strandedness information, mismatch counts, and position within the reads.

Using

Use the module name bam-readcount to discover versions available and to load the application.

Multicore

Currently we are not aware that bam-readcount can run using multiple cores.