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01 View/Search a File
01.01 Setting Up
Question:
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[intro_to_linux]$ grep -i bayes software.csv application,Bayescan,bayescan,beartooth,"BayeScan aims... application,Beast1,beast1,wildiris,BEAST is a cross-platform program for Bayesian... application,Beast2,beast2,beartooth,"BEAST 2 is a cross-platform program for Bayesian... application,Freebayes,freebayes,beartooth,"freebayes is a Bayesian genetic... application,Jags,jags,"beartooth,teton",Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical... application,RevBayes,revbayes,wildiris,Bayesian phylogenetic... application,ROHan,rohan,teton,"ROHan is a Bayesian framework... application,SourceTracker2,sourcetracker2,"beartooth,teton","SourceTracker, a Bayesian approach... [intro_to_linux]$ grep -r IPA * clusters/beartooth.html: .../pages/1893597185/IPA">IPA</a></td> software.csv:application,IPA,ipa,beartooth,Improved Phased Assembler (IPA) is... |
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02 Search for a File
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02.01a Searching for Files: find
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# dd.tx is actually a folder. # Notices the ’d’ in the long format list. [intro_to_linux]$ ls -l data total 4 drwxrwxr-x 6 arcc-t05 arcc-t05 2021 drwxrwxr-x 6 arcc-t05 arcc-t05 2022 drwxrwxr-x 5 arcc-t05 arcc-t05 2023 drwxrwxr-x 2 arcc-t05 arcc-t05 dd.tx [intro_to_linux]$ find . -type f -name "*.tx" ./data/2021/feb/february_01_2021.tx # We explicitly want lowercase. [intro_to_linux]$ find . -type f -iname "*.tx" ./data/2021/feb/february_01_2021.tx ./data/2022/20220723.TX |
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03 Output Redirection and Pipes
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03 Output Redirection and Pipes
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[intro_to_linux]$ cat vegatables.txt | grep -i beans | sort | uniq -i | wc -l 12 |
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04 More Intermediate Features, Next Steps, Suggestions and Summary
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04.01a More Intermediate Features
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