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What Have We Seen
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Although on the login nodes we do have a We can see that R is not available, nor most of the applications that researchers will require. There are:
We can not provide a system that provides everything all at once. |
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What we need is a method to enable users to find and select that they specifically need, and a method to allow them to configure and setup their sessions/environment to allow them to perform their analysis and research. |
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LMOD: An Environment Module System
ARCC: Lmod – Software
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What do we have available?
Compilers and eco systems: GNU family, Intel’s oneAPI, Nvidia’s hpc-sdk
Languages: C/C+, Fortran, Go, Java, Julia, Perl, Python, R, Ruby, Rust
Scientific libraries and toolkits: Built with a specific compiler: GNU by default
Standalone applications and utilities: Installed using:
Conda
Containers: running Singularity (not Docker)
We can create a Singularity image from a Docker image.
Binaries/Executables
Check the MedicineBow Software Page.
LMOD: An Environment Module System
ARCC: Lmod – Software
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What’s available?
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# Go back to your home folder. [...]$ cd ~ [~]$ cd intro_to_modules/ # Modules currently loaded. []$ ml Currently Loaded Modules: 1) slurm/latest (S) 2) arcc/1.0 (S) # What's available within my 'current' environment. # With respect to what modules I 'currently' have loaded. []$ module avail ... |
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