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[]$ cd /project/<project-name>/<username>/conda
[]$ module purge
[]$ module load miniconda3/24.3.0
[]$ conda create -p py_env
## Package Plan ##
environment location: /cluster/medbow/project/<project-name>/<username>/conda/py_env
# To activate this environment, use
# $ conda activate /cluster/medbow/project/<project-name>/<username>/conda/py_env
[]$ conda activate /cluster/medbow/project/<project-name>/<username>/conda/py_env
(/cluster/medbow/project/<project-name>/<username>/conda/py_env) []$ python --version
Python 3.12.2
(/cluster/medbow/project/<project-name>/<username>/conda/py_env) []$ which python
/apps/u/opt/linux/miniconda3/24.3.0/bin/python |
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Try Installing numpy into our Conda environment
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[]$ module purge
[]$ module load miniconda3/24.3.0
[]$ conda activate /cluster/medbow/project/<project-name>/<username>/conda/py_env
(/cluster/medbow/project/<project-name>/<username>/conda/py_env) []$ pip install numpy
Defaulting to user installation because normal site-packages is not writeable
Requirement already satisfied: numpy in /home/<username>/.local/lib/python3.12/site-packages (1.26.4)
(/cluster/medbow/project/<project-name>/<username>/conda/py_env) [salexan5@mblog1 conda]$ python ~/py_test.py
Python: 3.12.2 | packaged by Anaconda, Inc. | (main, Feb 27 2024, 17:35:02) [GCC 11.2.0]
Numpy: 1.26.4 |
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(/cluster/medbow/project/<project-name>/<username>/conda/py_env) [salexan5@mblog1 conda]$ pip list -v
Package Version Location Installer
----------------------- ----------- ---------------------------------------------------------------- ---------
anaconda-anon-usage 0.4.4 /apps/u/opt/linux/miniconda3/24.3.0/lib/python3.12/site-packages conda
archspec 0.2.3 /apps/u/opt/linux/miniconda3/24.3.0/lib/python3.12/site-packages conda
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numpy 1.26.4 /home/<username>/.local/lib/python3.12/site-packages pip
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pip 23.3.1 /apps/u/opt/linux/miniconda3/24.3.0/lib/python3.12/site-packages
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| Note |
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Starting a new session, notice which version of |
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[]$ module purge
[]$ module load miniconda3/24.3.0
[]$ conda activate /project/<project-name>/<username>/conda/py_env
(/project/<project-name>/<username>/conda/py_env) []$ pip list -v
Package Version Location Installer
----------------------- ----------- ---------------------------------------------------------------- ---------
...
numpy 2.0.0 /home/<username>/.local/lib/python3.12/site-packages pip
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(/project/<project-name>/<username>/conda/py_env) []$ export PYTHONUSERBASE=$CONDA_PREFIX
(/project/<project-name>/<username>/conda/py_env) []$ pip list -v
Package Version Location Installer
----------------------- -------- ---------------------------------------------------------------- ---------
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numpy 2.0.0 /project/<project-name>/<username>/conda/py_env/lib/python3.12/site-packages pip
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