Goal: Create an environment based using the R language that includes the TidyVerse library.
| Warning |
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Note: There is a known vulnerability with R versions less than 4.4.0. This page uses R version 4.3.1. This page is purely for example since as of the date of creating this page there were issues using an r-base/4.4.1. |
| Warning |
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I am hoping in a few weeks/months the 4.4.x base will be stable and I’ll update the examples. |
...
...
General Process
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[salexan5@mblog1 ~]$ conda create -n r_env r=4.3.1
salexan5@mblog1 ~[]$ conda activate r_env
(r_env) [salexan5@mblog1 ~]$ R --version
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
...
(r_env) [salexan5@mblog1 ~]$ conda search tidyverse
...
(r_env) [salexan5@mblog1 ~]$ conda install r-tidyverse=2.0.0
(r_env) [salexan5@mblog1 ~]$ R
> library(tidyverse)
── Attaching core tidyverse packages ──────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 2.0.0 ──
...
> quit()
Save workspace image? [y/n/c]: n
(r_env) [salexan5@mblog1 ~]$ conda deactivate
[salexan5@mblog1 ~]$ |
...
Create R Environment
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[salexan5@mblog1 ~]$ conda create -n r_env r=4.3.1
Channels:
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /project/arcc<project-name>/salexan5<username>/conda/envs/r_env
added / updated specs:
- r=4.3.1
... |
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| title | Full Details: 10s of R library dependencies |
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[salexan5@mblog1 ~]$ conda create -n r_env r=4.3.1
Channels:
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /project/arcc<project-name>/salexan5<username>/conda/envs/r_env
added / updated specs:
- r=4.3.1
The following packages will be downloaded:
package | build
---------------------------|-----------------
_libgcc_mutex-0.1 | main 3 KB
_openmp_mutex-5.1 | 1_gnu 21 KB
_r-mutex-1.0.0 | anacondar_1 2 KB
_sysroot_linux-64_curr_repodata_hack-3| haa98f57_10 12 KB
binutils_impl_linux-64-2.38| h2a08ee3_1 5.2 MB
binutils_linux-64-2.38.0 | hc2dff05_0 24 KB
blas-1.0 | openblas 46 KB
bwidget-1.9.16 | h9eba36c_0 219 KB
bzip2-1.0.8 | h5eee18b_6 262 KB
c-ares-1.19.1 | h5eee18b_0 118 KB
ca-certificates-2024.3.11 | h06a4308_0 127 KB
cairo-1.16.0 | hb05425b_5 1.2 MB
curl-8.7.1 | hdbd6064_0 86 KB
expat-2.6.2 | h6a678d5_0 177 KB
fontconfig-2.14.1 | h4c34cd2_2 281 KB
freetype-2.12.1 | h4a9f257_0 626 KB
fribidi-1.0.10 | h7b6447c_0 103 KB
gcc_impl_linux-64-11.2.0 | h1234567_1 22.2 MB
gcc_linux-64-11.2.0 | h5c386dc_0 25 KB
gfortran_impl_linux-64-11.2.0| h1234567_1 10.2 MB
gfortran_linux-64-11.2.0 | hc2dff05_0 24 KB
glib-2.78.4 | h6a678d5_0 508 KB
glib-tools-2.78.4 | h6a678d5_0 115 KB
graphite2-1.3.14 | h295c915_1 97 KB
gxx_impl_linux-64-11.2.0 | h1234567_1 10.6 MB
gxx_linux-64-11.2.0 | hc2dff05_0 24 KB
harfbuzz-4.3.0 | hf52aaf7_2 1.3 MB
icu-73.1 | h6a678d5_0 25.9 MB
jpeg-9e | h5eee18b_1 262 KB
kernel-headers_linux-64-3.10.0| h57e8cba_10 952 KB
krb5-1.20.1 | h143b758_1 1.3 MB
ld_impl_linux-64-2.38 | h1181459_1 654 KB
lerc-3.0 | h295c915_0 196 KB
libcurl-8.7.1 | h251f7ec_0 424 KB
libdeflate-1.17 | h5eee18b_1 64 KB
libedit-3.1.20230828 | h5eee18b_0 179 KB
libev-4.33 | h7f8727e_1 111 KB
libffi-3.4.4 | h6a678d5_1 141 KB
libgcc-devel_linux-64-11.2.0| h1234567_1 2.5 MB
libgcc-ng-11.2.0 | h1234567_1 5.3 MB
libgfortran-ng-11.2.0 | h00389a5_1 20 KB
libgfortran5-11.2.0 | h1234567_1 2.0 MB
libglib-2.78.4 | hdc74915_0 1.5 MB
libgomp-11.2.0 | h1234567_1 474 KB
libiconv-1.16 | h5eee18b_3 759 KB
libnghttp2-1.57.0 | h2d74bed_0 674 KB
libopenblas-0.3.21 | h043d6bf_0 5.4 MB
libpng-1.6.39 | h5eee18b_0 304 KB
libssh2-1.11.0 | h251f7ec_0 282 KB
libstdcxx-devel_linux-64-11.2.0| h1234567_1 14.6 MB
libstdcxx-ng-11.2.0 | h1234567_1 4.7 MB
libtiff-4.5.1 | h6a678d5_0 533 KB
libuuid-1.41.5 | h5eee18b_0 27 KB
libwebp-base-1.3.2 | h5eee18b_0 387 KB
libxcb-1.15 | h7f8727e_0 505 KB
libxml2-2.10.4 | hfdd30dd_2 754 KB
lz4-c-1.9.4 | h6a678d5_1 156 KB
make-4.2.1 | h1bed415_1 415 KB
ncurses-6.4 | h6a678d5_0 914 KB
openssl-3.0.14 | h5eee18b_0 5.2 MB
pango-1.50.7 | h05da053_0 427 KB
pcre2-10.42 | hebb0a14_1 1.3 MB
pip-24.0 | py312h06a4308_0 3.3 MB
pixman-0.40.0 | h7f8727e_1 373 KB
python-3.12.4 | h5148396_1 34.8 MB
r-4.3.1 | r43_0 4 KB
r-base-4.3.1 | h1ae530e_0 23.9 MB
r-boot-1.3_28.1 | r43h6115d3f_0 609 KB
r-class-7.3_22 | r43h76d94ec_0 105 KB
r-cluster-2.1.4 | r43h640688f_0 551 KB
r-codetools-0.2_19 | r43h6115d3f_0 103 KB
r-foreign-0.8_85 | r43h76d94ec_0 249 KB
r-kernsmooth-2.23_22 | r43h640688f_0 94 KB
r-lattice-0.22_5 | r43h76d94ec_0 1.3 MB
r-mass-7.3_60 | r43h76d94ec_0 1.1 MB
r-matrix-1.6_1.1 | r43h76d94ec_0 3.7 MB
r-mgcv-1.9_0 | r43h76d94ec_0 3.1 MB
r-nlme-3.1_163 | r43h640688f_0 2.2 MB
r-nnet-7.3_19 | r43h76d94ec_0 129 KB
r-recommended-4.3.1 | r43_0 4 KB
r-rpart-4.1.21 | r43h76d94ec_0 683 KB
r-spatial-7.3_17 | r43h76d94ec_0 149 KB
r-survival-3.5_7 | r43h76d94ec_0 5.9 MB
readline-8.2 | h5eee18b_0 357 KB
setuptools-69.5.1 | py312h06a4308_0 1.3 MB
sqlite-3.45.3 | h5eee18b_0 1.2 MB
sysroot_linux-64-2.17 | h57e8cba_10 32.6 MB
tk-8.6.14 | h39e8969_0 3.4 MB
tktable-2.10 | h3d55465_1 96 KB
tzdata-2024a | h04d1e81_0 116 KB
wheel-0.43.0 | py312h06a4308_0 142 KB
xz-5.4.6 | h5eee18b_1 643 KB
zlib-1.2.13 | h5eee18b_1 111 KB
zstd-1.5.5 | hc292b87_2 643 KB
------------------------------------------------------------
Total: 255.5 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main
_openmp_mutex pkgs/main/linux-64::_openmp_mutex-5.1-1_gnu
_r-mutex pkgs/main/linux-64::_r-mutex-1.0.0-anacondar_1
_sysroot_linux-64~ pkgs/main/noarch::_sysroot_linux-64_curr_repodata_hack-3-haa98f57_10
binutils_impl_lin~ pkgs/main/linux-64::binutils_impl_linux-64-2.38-h2a08ee3_1
binutils_linux-64 pkgs/main/linux-64::binutils_linux-64-2.38.0-hc2dff05_0
blas pkgs/main/linux-64::blas-1.0-openblas
bwidget pkgs/main/linux-64::bwidget-1.9.16-h9eba36c_0
bzip2 pkgs/main/linux-64::bzip2-1.0.8-h5eee18b_6
c-ares pkgs/main/linux-64::c-ares-1.19.1-h5eee18b_0
ca-certificates pkgs/main/linux-64::ca-certificates-2024.3.11-h06a4308_0
cairo pkgs/main/linux-64::cairo-1.16.0-hb05425b_5
curl pkgs/main/linux-64::curl-8.7.1-hdbd6064_0
expat pkgs/main/linux-64::expat-2.6.2-h6a678d5_0
fontconfig pkgs/main/linux-64::fontconfig-2.14.1-h4c34cd2_2
freetype pkgs/main/linux-64::freetype-2.12.1-h4a9f257_0
fribidi pkgs/main/linux-64::fribidi-1.0.10-h7b6447c_0
gcc_impl_linux-64 pkgs/main/linux-64::gcc_impl_linux-64-11.2.0-h1234567_1
gcc_linux-64 pkgs/main/linux-64::gcc_linux-64-11.2.0-h5c386dc_0
gfortran_impl_lin~ pkgs/main/linux-64::gfortran_impl_linux-64-11.2.0-h1234567_1
gfortran_linux-64 pkgs/main/linux-64::gfortran_linux-64-11.2.0-hc2dff05_0
glib pkgs/main/linux-64::glib-2.78.4-h6a678d5_0
glib-tools pkgs/main/linux-64::glib-tools-2.78.4-h6a678d5_0
graphite2 pkgs/main/linux-64::graphite2-1.3.14-h295c915_1
gxx_impl_linux-64 pkgs/main/linux-64::gxx_impl_linux-64-11.2.0-h1234567_1
gxx_linux-64 pkgs/main/linux-64::gxx_linux-64-11.2.0-hc2dff05_0
harfbuzz pkgs/main/linux-64::harfbuzz-4.3.0-hf52aaf7_2
icu pkgs/main/linux-64::icu-73.1-h6a678d5_0
jpeg pkgs/main/linux-64::jpeg-9e-h5eee18b_1
kernel-headers_li~ pkgs/main/noarch::kernel-headers_linux-64-3.10.0-h57e8cba_10
krb5 pkgs/main/linux-64::krb5-1.20.1-h143b758_1
ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.38-h1181459_1
lerc pkgs/main/linux-64::lerc-3.0-h295c915_0
libcurl pkgs/main/linux-64::libcurl-8.7.1-h251f7ec_0
libdeflate pkgs/main/linux-64::libdeflate-1.17-h5eee18b_1
libedit pkgs/main/linux-64::libedit-3.1.20230828-h5eee18b_0
libev pkgs/main/linux-64::libev-4.33-h7f8727e_1
libffi pkgs/main/linux-64::libffi-3.4.4-h6a678d5_1
libgcc-devel_linu~ pkgs/main/linux-64::libgcc-devel_linux-64-11.2.0-h1234567_1
libgcc-ng pkgs/main/linux-64::libgcc-ng-11.2.0-h1234567_1
libgfortran-ng pkgs/main/linux-64::libgfortran-ng-11.2.0-h00389a5_1
libgfortran5 pkgs/main/linux-64::libgfortran5-11.2.0-h1234567_1
libglib pkgs/main/linux-64::libglib-2.78.4-hdc74915_0
libgomp pkgs/main/linux-64::libgomp-11.2.0-h1234567_1
libiconv pkgs/main/linux-64::libiconv-1.16-h5eee18b_3
libnghttp2 pkgs/main/linux-64::libnghttp2-1.57.0-h2d74bed_0
libopenblas pkgs/main/linux-64::libopenblas-0.3.21-h043d6bf_0
libpng pkgs/main/linux-64::libpng-1.6.39-h5eee18b_0
libssh2 pkgs/main/linux-64::libssh2-1.11.0-h251f7ec_0
libstdcxx-devel_l~ pkgs/main/linux-64::libstdcxx-devel_linux-64-11.2.0-h1234567_1
libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-11.2.0-h1234567_1
libtiff pkgs/main/linux-64::libtiff-4.5.1-h6a678d5_0
libuuid pkgs/main/linux-64::libuuid-1.41.5-h5eee18b_0
libwebp-base pkgs/main/linux-64::libwebp-base-1.3.2-h5eee18b_0
libxcb pkgs/main/linux-64::libxcb-1.15-h7f8727e_0
libxml2 pkgs/main/linux-64::libxml2-2.10.4-hfdd30dd_2
lz4-c pkgs/main/linux-64::lz4-c-1.9.4-h6a678d5_1
make pkgs/main/linux-64::make-4.2.1-h1bed415_1
ncurses pkgs/main/linux-64::ncurses-6.4-h6a678d5_0
openssl pkgs/main/linux-64::openssl-3.0.14-h5eee18b_0
pango pkgs/main/linux-64::pango-1.50.7-h05da053_0
pcre2 pkgs/main/linux-64::pcre2-10.42-hebb0a14_1
pip pkgs/main/linux-64::pip-24.0-py312h06a4308_0
pixman pkgs/main/linux-64::pixman-0.40.0-h7f8727e_1
python pkgs/main/linux-64::python-3.12.4-h5148396_1
r pkgs/r/linux-64::r-4.3.1-r43_0
r-base pkgs/r/linux-64::r-base-4.3.1-h1ae530e_0
r-boot pkgs/r/noarch::r-boot-1.3_28.1-r43h6115d3f_0
r-class pkgs/r/linux-64::r-class-7.3_22-r43h76d94ec_0
r-cluster pkgs/r/linux-64::r-cluster-2.1.4-r43h640688f_0
r-codetools pkgs/r/noarch::r-codetools-0.2_19-r43h6115d3f_0
r-foreign pkgs/r/linux-64::r-foreign-0.8_85-r43h76d94ec_0
r-kernsmooth pkgs/r/linux-64::r-kernsmooth-2.23_22-r43h640688f_0
r-lattice pkgs/r/linux-64::r-lattice-0.22_5-r43h76d94ec_0
r-mass pkgs/r/linux-64::r-mass-7.3_60-r43h76d94ec_0
r-matrix pkgs/r/linux-64::r-matrix-1.6_1.1-r43h76d94ec_0
r-mgcv pkgs/r/linux-64::r-mgcv-1.9_0-r43h76d94ec_0
r-nlme pkgs/r/linux-64::r-nlme-3.1_163-r43h640688f_0
r-nnet pkgs/r/linux-64::r-nnet-7.3_19-r43h76d94ec_0
r-recommended pkgs/r/linux-64::r-recommended-4.3.1-r43_0
r-rpart pkgs/r/linux-64::r-rpart-4.1.21-r43h76d94ec_0
r-spatial pkgs/r/linux-64::r-spatial-7.3_17-r43h76d94ec_0
r-survival pkgs/r/linux-64::r-survival-3.5_7-r43h76d94ec_0
readline pkgs/main/linux-64::readline-8.2-h5eee18b_0
setuptools pkgs/main/linux-64::setuptools-69.5.1-py312h06a4308_0
sqlite pkgs/main/linux-64::sqlite-3.45.3-h5eee18b_0
sysroot_linux-64 pkgs/main/noarch::sysroot_linux-64-2.17-h57e8cba_10
tk pkgs/main/linux-64::tk-8.6.14-h39e8969_0
tktable pkgs/main/linux-64::tktable-2.10-h3d55465_1
tzdata pkgs/main/noarch::tzdata-2024a-h04d1e81_0
wheel pkgs/main/linux-64::wheel-0.43.0-py312h06a4308_0
xz pkgs/main/linux-64::xz-5.4.6-h5eee18b_1
zlib pkgs/main/linux-64::zlib-1.2.13-h5eee18b_1
zstd pkgs/main/linux-64::zstd-1.5.5-hc292b87_2
Downloading and Extracting Packages:
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate r_env
#
# To deactivate an active environment, use
#
# $ conda deactivate |
|
...
Did Search Work?
| Code Block |
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(r_env) [salexan5@mblog1 ~]$ conda search tidyverse
Loading channels: done
No match found for: tidyverse. Search: *tidyverse*
# Name Version Build Channel
r-tidyverse 1.0.0 r3.3.1_0 pkgs/r
...
r-tidyverse 1.3.1 r42h6115d3f_0 pkgs/r
r-tidyverse 2.0.0 r43h6115d3f_0 pkgs/r |
| Info |
|---|
There are no packages explicitly called “tidyverse”, but as a suggestion, there are packages called “r-tidyverse”. Conda R related packages typically are prefixed with r
_ |
...
Conda Install TidyVerse
| Info |
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TidyVerse is made up of 10s of R libraries. These dependencies are all installed. |
| Expand |
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|
| Code Block |
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(r_env) [salexan5@mblog1 ~]$ conda install r-tidyverse=2.0.0
Channels:
- defaults
Platform: linux-64
Collecting package metadata (repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /project/arcc<project-name>/salexan5<username>/conda/envs/r_env
added / updated specs:
- r-tidyverse=2.0.0
The following packages will be downloaded:
package | build
---------------------------|-----------------
pandoc-2.12 | h06a4308_3 10.5 MB
r-askpass-1.2.0 | r43h76d94ec_0 29 KB
r-backports-1.4.1 | r43h76d94ec_0 112 KB
r-base64enc-0.1_3 | r43h76d94ec_4 46 KB
r-bit-4.0.5 | r43h76d94ec_0 1.0 MB
r-bit64-4.0.5 | r43h76d94ec_0 480 KB
r-blob-1.2.4 | r43h6115d3f_0 52 KB
r-broom-1.0.5 | r43h6115d3f_0 1.7 MB
r-bslib-0.5.1 | r43h6115d3f_0 4.8 MB
r-cachem-1.0.8 | r43h76d94ec_0 71 KB
r-callr-3.7.3 | r43h6115d3f_0 403 KB
r-cellranger-1.1.0 | r43h6115d3f_0 103 KB
r-cli-3.6.1 | r43h884c59f_0 1.2 MB
r-clipr-0.8.0 | r43h6115d3f_0 65 KB
r-colorspace-2.1_0 | r43h76d94ec_0 2.4 MB
r-conflicted-1.2.0 | r43h142f84f_0 61 KB
r-cpp11-0.4.6 | r43h6115d3f_0 221 KB
r-crayon-1.5.2 | r43h6115d3f_0 159 KB
r-curl-5.1.0 | r43h76d94ec_0 430 KB
r-data.table-1.14.8 | r43h76d94ec_0 1.8 MB
r-dbi-1.1.3 | r43h6115d3f_0 697 KB
r-dbplyr-2.3.4 | r43h6115d3f_0 1.0 MB
r-digest-0.6.33 | r43h884c59f_0 190 KB
r-dplyr-1.1.3 | r43h884c59f_0 1.3 MB
r-dtplyr-1.3.1 | r43h6115d3f_0 344 KB
r-ellipsis-0.3.2 | r43h76d94ec_0 40 KB
r-evaluate-0.22 | r43h6115d3f_0 85 KB
r-fansi-1.0.5 | r43h76d94ec_0 313 KB
r-farver-2.1.1 | r43h884c59f_0 1.4 MB
r-fastmap-1.1.1 | r43h884c59f_0 67 KB
r-fontawesome-0.5.2 | r43h6115d3f_0 1.2 MB
r-forcats-1.0.0 | r43h6115d3f_0 409 KB
r-fs-1.6.3 | r43h884c59f_0 481 KB
r-gargle-1.5.2 | r43h142f84f_0 689 KB
r-generics-0.1.3 | r43h142f84f_0 81 KB
r-ggplot2-3.4.4 | r43h6115d3f_0 3.9 MB
r-glue-1.6.2 | r43h76d94ec_0 146 KB
r-googledrive-2.1.1 | r43h6115d3f_0 1.1 MB
r-googlesheets4-1.1.1 | r43h6115d3f_0 497 KB
r-gtable-0.3.4 | r43h6115d3f_0 214 KB
r-haven-2.5.3 | r43h884c59f_0 356 KB
r-highr-0.10 | r43h6115d3f_0 54 KB
r-hms-1.1.3 | r43h6115d3f_0 102 KB
r-htmltools-0.5.6.1 | r43h76d94ec_0 347 KB
r-httr-1.4.7 | r43h6115d3f_0 452 KB
r-ids-1.0.1 | r43h142f84f_0 122 KB
r-isoband-0.2.7 | r43h884c59f_0 1.5 MB
r-jquerylib-0.1.4 | r43h6115d3f_0 296 KB
r-jsonlite-1.8.7 | r43h76d94ec_0 618 KB
r-knitr-1.44 | r43h6115d3f_0 1.2 MB
r-labeling-0.4.3 | r43h6115d3f_0 64 KB
r-lifecycle-1.0.3 | r43h142f84f_0 116 KB
r-lubridate-1.9.3 | r43h76d94ec_0 950 KB
r-magrittr-2.0.3 | r43h76d94ec_0 200 KB
r-memoise-2.0.1 | r43h6115d3f_0 53 KB
r-mime-0.12 | r43h76d94ec_0 49 KB
r-modelr-0.1.11 | r43h6115d3f_0 211 KB
r-munsell-0.5.0 | r43h6115d3f_0 236 KB
r-openssl-2.1.1 | r43h76d94ec_0 619 KB
r-pillar-1.9.0 | r43h6115d3f_0 591 KB
r-pkgconfig-2.0.3 | r43h6115d3f_0 24 KB
r-prettyunits-1.2.0 | r43h142f84f_0 158 KB
r-processx-3.8.2 | r43h76d94ec_0 313 KB
r-progress-1.2.2 | r43h142f84f_0 88 KB
r-ps-1.7.5 | r43h76d94ec_0 301 KB
r-purrr-1.0.2 | r43h76d94ec_0 469 KB
r-r6-2.5.1 | r43h6115d3f_0 89 KB
r-ragg-1.2.6 | r43h884c59f_0 427 KB
r-rappdirs-0.3.3 | r43h76d94ec_0 50 KB
r-rcolorbrewer-1.1_3 | r43h6115d3f_1 57 KB
r-readr-2.1.4 | r43h884c59f_0 761 KB
r-readxl-1.4.3 | r43h884c59f_0 724 KB
r-rematch-2.0.0 | r43h6115d3f_0 22 KB
r-rematch2-2.1.2 | r43h142f84f_0 51 KB
r-reprex-2.0.2 | r43h6115d3f_0 488 KB
r-rlang-1.1.1 | r43h884c59f_0 1.4 MB
r-rmarkdown-2.25 | r43h6115d3f_0 1.9 MB
r-rstudioapi-0.15.0 | r43h6115d3f_0 283 KB
r-rvest-1.0.3 | r43h6115d3f_0 205 KB
r-sass-0.4.7 | r43h884c59f_0 2.2 MB
r-scales-1.2.1 | r43h6115d3f_0 577 KB
r-selectr-0.4_2 | r43h6115d3f_0 404 KB
r-stringi-1.7.12 | r43h884c59f_0 870 KB
r-stringr-1.5.0 | r43h6115d3f_0 284 KB
r-sys-3.4.2 | r43h76d94ec_0 46 KB
r-systemfonts-1.0.5 | r43h884c59f_0 227 KB
r-textshaping-0.3.7 | r43h884c59f_0 100 KB
r-tibble-3.2.1 | r43h76d94ec_0 594 KB
r-tidyr-1.3.0 | r43h884c59f_0 1.1 MB
r-tidyselect-1.2.0 | r43h6115d3f_0 208 KB
r-tidyverse-2.0.0 | r43h6115d3f_0 414 KB
r-timechange-0.2.0 | r43h884c59f_0 175 KB
r-tinytex-0.48 | r43h142f84f_0 138 KB
r-tzdb-0.4.0 | r43h884c59f_0 514 KB
r-utf8-1.2.4 | r43h76d94ec_0 138 KB
r-uuid-1.1_1 | r43h76d94ec_0 50 KB
r-vctrs-0.6.4 | r43h884c59f_0 1.2 MB
r-viridislite-0.4.2 | r43h6115d3f_0 1.2 MB
r-vroom-1.6.4 | r43h884c59f_0 838 KB
r-withr-2.5.1 | r43h6115d3f_0 224 KB
r-xfun-0.40 | r43h76d94ec_0 410 KB
r-xml2-1.3.5 | r43h884c59f_0 223 KB
r-yaml-2.3.7 | r43h76d94ec_0 111 KB
------------------------------------------------------------
Total: 67.5 MB
The following NEW packages will be INSTALLED:
pandoc pkgs/main/linux-64::pandoc-2.12-h06a4308_3
r-askpass pkgs/r/linux-64::r-askpass-1.2.0-r43h76d94ec_0
r-backports pkgs/r/linux-64::r-backports-1.4.1-r43h76d94ec_0
r-base64enc pkgs/r/linux-64::r-base64enc-0.1_3-r43h76d94ec_4
r-bit pkgs/r/linux-64::r-bit-4.0.5-r43h76d94ec_0
r-bit64 pkgs/r/linux-64::r-bit64-4.0.5-r43h76d94ec_0
r-blob pkgs/r/noarch::r-blob-1.2.4-r43h6115d3f_0
r-broom pkgs/r/noarch::r-broom-1.0.5-r43h6115d3f_0
r-bslib pkgs/r/noarch::r-bslib-0.5.1-r43h6115d3f_0
r-cachem pkgs/r/linux-64::r-cachem-1.0.8-r43h76d94ec_0
r-callr pkgs/r/noarch::r-callr-3.7.3-r43h6115d3f_0
r-cellranger pkgs/r/noarch::r-cellranger-1.1.0-r43h6115d3f_0
r-cli pkgs/r/linux-64::r-cli-3.6.1-r43h884c59f_0
r-clipr pkgs/r/noarch::r-clipr-0.8.0-r43h6115d3f_0
r-colorspace pkgs/r/linux-64::r-colorspace-2.1_0-r43h76d94ec_0
r-conflicted pkgs/r/noarch::r-conflicted-1.2.0-r43h142f84f_0
r-cpp11 pkgs/r/noarch::r-cpp11-0.4.6-r43h6115d3f_0
r-crayon pkgs/r/noarch::r-crayon-1.5.2-r43h6115d3f_0
r-curl pkgs/r/linux-64::r-curl-5.1.0-r43h76d94ec_0
r-data.table pkgs/r/linux-64::r-data.table-1.14.8-r43h76d94ec_0
r-dbi pkgs/r/noarch::r-dbi-1.1.3-r43h6115d3f_0
r-dbplyr pkgs/r/noarch::r-dbplyr-2.3.4-r43h6115d3f_0
r-digest pkgs/r/linux-64::r-digest-0.6.33-r43h884c59f_0
r-dplyr pkgs/r/linux-64::r-dplyr-1.1.3-r43h884c59f_0
r-dtplyr pkgs/r/noarch::r-dtplyr-1.3.1-r43h6115d3f_0
r-ellipsis pkgs/r/linux-64::r-ellipsis-0.3.2-r43h76d94ec_0
r-evaluate pkgs/r/noarch::r-evaluate-0.22-r43h6115d3f_0
r-fansi pkgs/r/linux-64::r-fansi-1.0.5-r43h76d94ec_0
r-farver pkgs/r/linux-64::r-farver-2.1.1-r43h884c59f_0
r-fastmap pkgs/r/linux-64::r-fastmap-1.1.1-r43h884c59f_0
r-fontawesome pkgs/r/noarch::r-fontawesome-0.5.2-r43h6115d3f_0
r-forcats pkgs/r/noarch::r-forcats-1.0.0-r43h6115d3f_0
r-fs pkgs/r/linux-64::r-fs-1.6.3-r43h884c59f_0
r-gargle pkgs/r/noarch::r-gargle-1.5.2-r43h142f84f_0
r-generics pkgs/r/noarch::r-generics-0.1.3-r43h142f84f_0
r-ggplot2 pkgs/r/noarch::r-ggplot2-3.4.4-r43h6115d3f_0
r-glue pkgs/r/linux-64::r-glue-1.6.2-r43h76d94ec_0
r-googledrive pkgs/r/noarch::r-googledrive-2.1.1-r43h6115d3f_0
r-googlesheets4 pkgs/r/noarch::r-googlesheets4-1.1.1-r43h6115d3f_0
r-gtable pkgs/r/noarch::r-gtable-0.3.4-r43h6115d3f_0
r-haven pkgs/r/linux-64::r-haven-2.5.3-r43h884c59f_0
r-highr pkgs/r/noarch::r-highr-0.10-r43h6115d3f_0
r-hms pkgs/r/noarch::r-hms-1.1.3-r43h6115d3f_0
r-htmltools pkgs/r/linux-64::r-htmltools-0.5.6.1-r43h76d94ec_0
r-httr pkgs/r/noarch::r-httr-1.4.7-r43h6115d3f_0
r-ids pkgs/r/noarch::r-ids-1.0.1-r43h142f84f_0
r-isoband pkgs/r/linux-64::r-isoband-0.2.7-r43h884c59f_0
r-jquerylib pkgs/r/noarch::r-jquerylib-0.1.4-r43h6115d3f_0
r-jsonlite pkgs/r/linux-64::r-jsonlite-1.8.7-r43h76d94ec_0
r-knitr pkgs/r/noarch::r-knitr-1.44-r43h6115d3f_0
r-labeling pkgs/r/noarch::r-labeling-0.4.3-r43h6115d3f_0
r-lifecycle pkgs/r/noarch::r-lifecycle-1.0.3-r43h142f84f_0
r-lubridate pkgs/r/linux-64::r-lubridate-1.9.3-r43h76d94ec_0
r-magrittr pkgs/r/linux-64::r-magrittr-2.0.3-r43h76d94ec_0
r-memoise pkgs/r/noarch::r-memoise-2.0.1-r43h6115d3f_0
r-mime pkgs/r/linux-64::r-mime-0.12-r43h76d94ec_0
r-modelr pkgs/r/noarch::r-modelr-0.1.11-r43h6115d3f_0
r-munsell pkgs/r/noarch::r-munsell-0.5.0-r43h6115d3f_0
r-openssl pkgs/r/linux-64::r-openssl-2.1.1-r43h76d94ec_0
r-pillar pkgs/r/noarch::r-pillar-1.9.0-r43h6115d3f_0
r-pkgconfig pkgs/r/noarch::r-pkgconfig-2.0.3-r43h6115d3f_0
r-prettyunits pkgs/r/noarch::r-prettyunits-1.2.0-r43h142f84f_0
r-processx pkgs/r/linux-64::r-processx-3.8.2-r43h76d94ec_0
r-progress pkgs/r/noarch::r-progress-1.2.2-r43h142f84f_0
r-ps pkgs/r/linux-64::r-ps-1.7.5-r43h76d94ec_0
r-purrr pkgs/r/linux-64::r-purrr-1.0.2-r43h76d94ec_0
r-r6 pkgs/r/noarch::r-r6-2.5.1-r43h6115d3f_0
r-ragg pkgs/r/linux-64::r-ragg-1.2.6-r43h884c59f_0
r-rappdirs pkgs/r/linux-64::r-rappdirs-0.3.3-r43h76d94ec_0
r-rcolorbrewer pkgs/r/noarch::r-rcolorbrewer-1.1_3-r43h6115d3f_1
r-readr pkgs/r/linux-64::r-readr-2.1.4-r43h884c59f_0
r-readxl pkgs/r/linux-64::r-readxl-1.4.3-r43h884c59f_0
r-rematch pkgs/r/noarch::r-rematch-2.0.0-r43h6115d3f_0
r-rematch2 pkgs/r/noarch::r-rematch2-2.1.2-r43h142f84f_0
r-reprex pkgs/r/noarch::r-reprex-2.0.2-r43h6115d3f_0
r-rlang pkgs/r/linux-64::r-rlang-1.1.1-r43h884c59f_0
r-rmarkdown pkgs/r/noarch::r-rmarkdown-2.25-r43h6115d3f_0
r-rstudioapi pkgs/r/noarch::r-rstudioapi-0.15.0-r43h6115d3f_0
r-rvest pkgs/r/noarch::r-rvest-1.0.3-r43h6115d3f_0
r-sass pkgs/r/linux-64::r-sass-0.4.7-r43h884c59f_0
r-scales pkgs/r/noarch::r-scales-1.2.1-r43h6115d3f_0
r-selectr pkgs/r/noarch::r-selectr-0.4_2-r43h6115d3f_0
r-stringi pkgs/r/linux-64::r-stringi-1.7.12-r43h884c59f_0
r-stringr pkgs/r/noarch::r-stringr-1.5.0-r43h6115d3f_0
r-sys pkgs/r/linux-64::r-sys-3.4.2-r43h76d94ec_0
r-systemfonts pkgs/r/linux-64::r-systemfonts-1.0.5-r43h884c59f_0
r-textshaping pkgs/r/linux-64::r-textshaping-0.3.7-r43h884c59f_0
r-tibble pkgs/r/linux-64::r-tibble-3.2.1-r43h76d94ec_0
r-tidyr pkgs/r/linux-64::r-tidyr-1.3.0-r43h884c59f_0
r-tidyselect pkgs/r/noarch::r-tidyselect-1.2.0-r43h6115d3f_0
r-tidyverse pkgs/r/noarch::r-tidyverse-2.0.0-r43h6115d3f_0
r-timechange pkgs/r/linux-64::r-timechange-0.2.0-r43h884c59f_0
r-tinytex pkgs/r/noarch::r-tinytex-0.48-r43h142f84f_0
r-tzdb pkgs/r/linux-64::r-tzdb-0.4.0-r43h884c59f_0
r-utf8 pkgs/r/linux-64::r-utf8-1.2.4-r43h76d94ec_0
r-uuid pkgs/r/linux-64::r-uuid-1.1_1-r43h76d94ec_0
r-vctrs pkgs/r/linux-64::r-vctrs-0.6.4-r43h884c59f_0
r-viridislite pkgs/r/noarch::r-viridislite-0.4.2-r43h6115d3f_0
r-vroom pkgs/r/linux-64::r-vroom-1.6.4-r43h884c59f_0
r-withr pkgs/r/noarch::r-withr-2.5.1-r43h6115d3f_0
r-xfun pkgs/r/linux-64::r-xfun-0.40-r43h76d94ec_0
r-xml2 pkgs/r/linux-64::r-xml2-1.3.5-r43h884c59f_0
r-yaml pkgs/r/linux-64::r-yaml-2.3.7-r43h76d94ec_0
Downloading and Extracting Packages:
Preparing transaction: done
Verifying transaction: done
Executing transaction: done |
|
...
Confirm where this R environment is located.
| Code Block |
|---|
[salexan5@mblog1 ~]$ cat .conda/environments.txt
/home/salexan5<username>/.conda/envs/py_env
/project/arcc<project-name>/salexan5<username>/conda/envs/r_env
[salexan5@mblog2 ~a]$ cd /project/arcc<project-name>/salexan5<username>/conda
[salexan5@mblog2 conda]$ du -d 1 -h
1.2G ./envs
526M ./pkgs
1.7G . |
...
Using R Environment
| Code Block |
|---|
[salexan5@mblog2 ~@mblog1]$ salloc -A arcc -t 10:00
salloc: Granted job allocation 786989
salloc: Nodes mba30-001 are ready for job
[salexan5@mba30@mba30-001 ~]$ module purge
[@mba30-001]$ module load miniconda3/24.3.0
[salexan5@mba30@mba30-001 ~]$ conda activate r_env
(r_env) [salexan5@mba30@mba30-001 ~]$ Rscript r_test.R
── Attaching core tidyverse packages ──────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 2.0.0 ──
✔ dplyr 1.1.3 ✔ readr 2.1.4
...
(r_env) [salexan5@mba30@mba30-001 ~]$ conda deactivate
[salexan5@mba30@mba30-001 ~]$ exit
exit
salloc: Relinquishing job allocation 786989
[@mblog1]$ |
File: r_test.R
| Code Block |
|---|
library(tidyverse) |
...