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This is a custom Confluence template that is intended to be re-used in the creation of workshops presented by ARCC on the Wiki. All of the content in these sections is intended to be replaced by the author of the workshop. The first step in this style guide is to ensure that the the page is in wide mode to maximize the real estate for content when possible. The Title of the Page should be the same as the Title of the workshop and this section should include a quick intro to the topic, why it’s important for ARCC users, and what users should expect to get out of this workshop. Next should be a Table of Contents macro in vertical format. The Table is intended to be used as an agenda section for presenter mode as well as navigation for non-presenting viewing so that users can find the documentation and navigate to what they need to brush up on. Finally, at the end of each section, there should be a divider to indicate the separation of “slides”With Open OnDemand being an official ARCC supported service, we would be re missed to not cover how Data Transfer works within the application. The Open OnDemand web portal includes a file browsing option that enables file management capabilities for users to upload, download, copy/move, view, rename, and delete files on ARCC HPC and Storage resources. However, there are some nuances that users should be aware of before committing to using Open OnDemand as their only data transfer tool. Please follow along with the examples below to learn about the data transfer abilities of Open OnDemand.

Before we begin, please make sure to have logged into Open OnDemand for MedicineBow just as you have in a prior tutorial, by navigating your we browser to https://medicinebow.arcc.uwyo.edu/.

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Table of Contents
stylenone

Headers and Sections

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Code Examples

Two Column Tables are nice ways to separate content/ Background info along with a code example on the same “Slide”. Please notice the table width. This should stop scroll bars from appearing

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Bullets are nice to include for distinct points

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yep

...

they

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sure

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Code Block
Please use the "code snippet" in the + button when creating code examples. Also please do not go
past the width of the table. This is to prevent scroll bars appearing













This is the Max number of code lines to show on an example

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Straight Code - No context

Code Block
Limit to 16 lines in the example. 














This is the end

Same Thing With Images

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Two Column Tables are nice ways to separate content/ Background info along with an image example on the same “Slide”. Please notice the table width. This should stop scroll bars from appearing

  • Bullets are nice to include for distinct points

  • yep

  • they

  • sure

  • are

    This is 14 lines

image-20240514-000033.pngImage Removed

Alternatively No Table

image-20240514-000127.pngImage Removed

Finally The End

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Link to Previous sub-module or Home Module

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The File Browser App

Easily found on the top bar of the Open OnDemand Interface, the Files App can take you to one of your three main cluster directories of home, gscratch, and project. From here you can perform several file operations:

  • upload

  • download

  • Create new files/directories

  • copy/move

  • rename

  • Delete

image-20240621-173941.pngImage Added

Note

It’s important to know that file permissions can’t be changed in Open On Demand

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Exploring the App

As you can see in the top image, there are buttons, check boxes, and a search bar available to perform many functions previously mentioned and some that haven’t been.

It is important to know that Open OnDemand has their own terminology for hidden files called Dotfiles. If for some reason you have transferred some configuration files but aren’t seeing the, you can check this box to see them listed.

image-20240621-184900.pngImage Added

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Uploading a File

There are two ways to upload data.

  • You can drag and drop from your file browser into the Files App

  • Or you can Click on the ‘Upload’ Button

This works for both entire directories as well as individual files.

Screenshot from 2024-06-21 13-18-01.pngImage Added

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Open OnDemand Restrictions

While Open OnDemand makes transferring data as easy as other tools you may be used to like Google Drive or Dropbox, it is a tool that was designed to do much more than just transfer data and since it is using the https protocol. ARCC only recommends transferring small files such as code, README files or anything under 5 gigabytes.

Warning

Do not transfer large files with Open OnDemand. Please see the next section on Globus for transferring large amounts of data.

If you are unsure if Open OnDemand will work for your data transfer needs, please see the other tools that ARCC supports or contact us at arcchelp@uwyo.edu

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Next Steps