Trinity
- Simon Alexander
Owned by Simon Alexander
1 Overview | 2 Using | 2.1.1 Starting Trinity: | 2.2 Multicore
Overview
Trinity: Trinity assembles transcript sequences from Illumina RNA-Seq data.
Using
Use the module name trinity to discover versions available and to load the application.
Trinity has been built as a Singularity image, so after loading the module and running the Trinity command, you're actually starting the container image within which you call the related commands. For example:
Starting Trinity:
[]$ module load trinity<version>
[]$ trinity
Singularity>
Singularity> Trinity ...
...Multicore
The Trinity application allows you define multiple cores with the --CPU option. See the Trinity command for more information.