Sequence Hub CLI

Overview

• The BaseSpace Sequence Hub CLI tool suite is a set of command-line tools available for interacting with BaseSpace, Illumina's cloud-based sequencing informatics platform.

  • Link to documentation: CLI Overview

Using

Use the module name sequencehubcli to discover versions available and to load the application. The application provides a command-line interface to BaseSpace, and requires an Illumia account to access. Once an account is created it must be authenticated. To authenticate an account load the module and enter the following:

A URL will be generated, open the URL in a web browser and sign in or sign up for an account and accept the authorization request. After which the application will be authorized to use the cloud account. To get a full list of commands available please refer to the output of the following command:

Multicore

The sequencehubcli does not use multiple cores, nodes or threads.