IPA
- Simon Alexander
Owned by Simon Alexander, created
Oct 03, 2023
1 min read
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Overview
Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBio HiFi reads to produce high-quality phased genome assemblies. IPA is an end-to-end solution, starting with input reads and resulting in a polished assembly. IPA is fast, providing an easy to use local run mode or a distributed pipeline for a cluster.
On Beartooth we have installed: Pacific Biosciences: pbipa
Using
Use the module name ipa to discover versions available and to load the application.
Multicore
The ipa application allows you define multiple cores and submit multiple jobs. For more information look at the --nthreads and --njobs options within the ipa local and ipa dist commands.