IPA
Overview
Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBio HiFi reads to produce high-quality phased genome assemblies. IPA is an end-to-end solution, starting with input reads and resulting in a polished assembly. IPA is fast, providing an easy to use local run mode or a distributed pipeline for a cluster.
On Beartooth we have installed: Pacific Biosciences: pbipa
Using
Use the module name ipa
to discover versions available and to load the application.
Multicore
The ipa
application allows you define multiple cores and submit multiple jobs. For more information look at the --nthreads
and --njobs
options within the ipa local
and ipa dist
commands.