Kallisto

Overview

• Kallisto: is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.

  • manual

Using

Use the module name kallisto to discover versions available and to load the application.

Multicore

The kallisto application allows you use multiple cores within calls. It provides a number of commands, each which has its own flags. For more information call kallisto <cmd> to see the various options - for example kallisto index details the -t/--threads flags.