Software Update Log

Update Log

When loading a module we recommend always defining the version you require, and not relying on what you think the default version might be. View the 'Which Software Version' section for instructions on how to discover available versions.

Date

Cluster

Application/Library

Module Name

Version

Action

Notes

Date

Cluster

Application/Library

Module Name

Version

Action

Notes

09/13/2022

teton

Samtools

samtools

1.16.1

updated

 

09/13/2022

teton

bcftools

bcftools

1.16

updated

Part of the Samtools suite of tools.

09/13/2022

teton

htslib

htslib

1.16

updated

Part of the Samtools suite of tools.

09/01/2022

teton

FFTW

fftw

3.3.10

installed

Built with Nvidia HPC SDK 22.7.

08/22/2022

teton

Nvidia HPC SDK

nvidia/hpc-sdk

22.7

updated

Built with CUDA 11.7 support.

08/22/2022

teton

CUDA

cuda

11.7.1

updated

Built with: gcc/11.2.0

08/10/2022

teton

Wannier90

wannier90

3.1.0

installed

Built with: gcc/11.2.0 openmpi/4.1.2 netlib-lapack/3.9.1 and openblas/0.3.18

08/10/2022

teton

LAMMPS

lammps

20220623

updated

Additional packages: ADIOS, ATC, DIFFRACTION, KSPACE, MANYBODY, MEAM, MOLECULE, REAXFF, REPLICA, RIGID, and VORONOI

8/8/2022

teton

EddyPro Engine

eddyproengine

7.0.9

installed

 

7/13/2022

wildiris

Gentools

gentools

1.0.0

installed

A collection of the following packages: blobtools, bedtools, canu, filtlong, masurca, medaka, miniasm, minimap2, NanoPlot, pilon, porechop, racon, tabview

7/13/2022

teton

Tesseract

tesseract

4.1.1

installed

 

7/7/2022

teton

FFTW

fftw

3.3.10

updated

Built with gcc/11.2.0 and openmpi/4.1.2

6/9/2022

wildiris

Trimmomatic

trimmomatic

0.40

installed

 

6/9/2022

wildiris

QUAST

quast

5.0.2

installed

 

6/9/2022

wildiris

OrthoFinder

orthofinder

2.5.4

installed

 

6/9/2022

wildiris

MultiQC

multiqc

1.12

installed

 

6/9/2022

teton

EnergyPlus

energyplus

9.6.0

installed

 

6/9/2022

wildiris

BUSCO

busco

5.3.2

installed

 

6/9/2022

wildiris

Blobtools2

blobtools2

3.1.5

installed

 

6/9/2022

wildirs

RAxML

raxml

8.2.12

installed

 

5/12/2022

teton

BUSCO

busco

5.3.2

installed

 

5/5/2022

teton

PLINK

plink

1.9

installed

 

5/5/2022

teton

MATLAB

matlab

2022a

updated

 

4/7/2022

teton

QIIME

qiime2

2022.2

updated

 

4/1/2022

teton

MATLAB

matlab

2021b

installed

 

3/30/2022

teton

SLiM

slim

3.7.1

updated

 

3/04/2022

teton

Guppy

guppy-cpu/guppy-gpu

6.0.1

installed

 

2/28/2022

teton

DFTB

dftb

21.1

installed

Built from a specific tree branch: mdForces

2/23/2022

teton

OpenFOAM.ORG

built by user

9.0

details

Details the steps required to build a local version.

2/23/2022

teton

Nextflow

nextflow

21.10.6

installed

 

1/22/2022

teton

Boost: C++ Libraries

boost

1.78.0

updated

Built with gcc/11.2.0

1/18/2022

teton

Compiler: GNU GCC

gcc

11.2.0

updated

 

1/11/2022

teton

Python

python

3.10.1

updated

With numpy (1.22.2) and pandas (1.4.1)

1/7/2022

teton

Packmol

packmol

20.3.3

installed

 

11/18/2021

teton

GeneMark

genemark

4.68

installed

 

09/28/2021

teton

DeepLabCut - CPU version

deeplabcut

2.2.0.2

installed

 

09/28/2021

teton

Megan

megan

6.21.12

installed

 

09/24/2021

teton

Miniconda

miniconda3

4.10.3

updated

 

09/23/2021

teton

mafTools, sonLib, pinchesAndCacti

maftools

0.1

installed

 

08/25/2021

teton

HDF5

hdf5

1.12.1

updated

Versions: gcc/openmpi and intel/intel-mpi

08/25/2021

teton

Singularity

singularity

3.8.1

updated

 

08/19/2021

teton

TransDecoder

N/A

5.5.0

installed

Instructions to install locally.

08/09/2021

teton

LAMMPS

lammps

20210809

updated

Additional packages: KSPACE, MANYBODY, MOLECULE, RIGID, REPLICA, USER-ADIOS, USER-ATC, USER-DIFFRACTION, USER-MEAMC, USER-REAXC and VORONOI

06/15/2021

teton

ANGSD

angsd

0.935

installed

 

06/15/2021

teton

Samtools

samtools

1.12

updated

 

06/15/2021

teton

HTSlib

htslib

1.12

updated

 

06/03/2021

teton

SourceTracker2

sourcetracker2

2.0.1

installed

 

05/07/2021

teton

Qiime

qiime2

2021.4

updated

 

03/12/2021

teton

Spades

spades

3.15.2

updated

 

02/19/2021

loren

ITK

libs/itk/5.1.2

5.1.2

updated

 

02/19/2021

loren

VTK

libs/vtk/8.2.0

8.2.0

updated

 

02/12/2021

teton

TREES

trees

3

installed

 

01/22/2021

teton

VSEARCH

vsearch

2.15.1

updated

 

01/16/2021

teton

KentUtils

kentutils

1.04.0

installed

 

15/01/2021

teton

ParaView

paraview

5.8.1

installed

 

01/05/2021

loren

ParaView

apps/paraview/5.8.1

5.8.1

updated

 

12/16/2020

teton

HTSeq

htseq

0.12.4

updated

 

11/16/2020

loren

Avizo

apps/avizo

2020.02

installed

 

11/16/2020

loren

PerGeos

apps/pergeos

2019.04

installed

 

11/09/2020

teton

OpenSMOKE

opensmoke

0.11.0

installed

 

11/02/2020

teton

Quantum Espresso

quantum-espresso

6.6

installed

Uses intel and intel-mpi

10/28/2020

teton

DFTB

dftb

20.1

installed

 

10/14/2020

teton

Cutadapt

cutadapt

2.10

updated

 

10/08/2020

teton

MOOSE

built by user

 

details

Master branch as off 10/08/2020

Instructions on how to build MOOSE on teton, using the petsc/3.11.4 module.

10/01/2020

teton

LAMMPS

lammps

20201001

updated

Additional packages: KSPACE, MANYBODY, MOLECULE, RIGID, REPLICA, USER-ADIOS, USER-ATC, USER-MEAMC, USER-REAXC and VORONOI

09/01/2020

teton

QIIME

qiime2

2020.8

updated

With q2-aldex2 plugin

07/31/2020

teton

GATK

gatk

4.1.8.0

updated

 

07/01/2020

teton

R

r

4.0.2

updated

Built with intel compiler and MKL

06/24/2020

teton

R

r

4.0.2

updated

Built with gcc/7.3.0

6/22/2020

teton

QIIME

qiime2

2020.2b

updated

With q2-aldex2 plugin

6/18/2020

teton

QIIME

qiime2

2020.2

updated

 

03/25/2020

teton

BLAST

blast-plus

2.10.0

updated

 

03/25/2020

teton

LAMMPS

lammps

20200324

updated

Added package RIGID

03/10/2020

teton

SNOPT

snopt

7.2.13

installed

 

03/05/2020

teton

LAMMPS

lammps

20200305

updated

Added packages KSPACE and CPM

02/28/2020

teton

LAMMPS

lammps

20200227

updated

added packages: MANYBODY, VORONOI, USER-ATC, USER-MEAMC and USER-ADIOS

02/13/2020

teton

P7zip

p7zip

p7zip/16.02

installed

 

02/07/2020

teton

QIIME

qiime2

2019.10

updated

 

02/05/2020

teton

LAMMPS

lammps

20190807

updated

LAMMPS (7 Aug 2019) with packages: MOLECULE and USER-REAXC

01/17/2020

teton

ModelTest

modeltest

0.1.6

installed

 

01/07/2020

teton

Ensembl-Vep

ensembl-vep

98.3

installed

 

12/10/2019

teton

JDK

jdk

11.0.5

updated

 

11/15/2019

teton

ROHan

rohan

1.0.0

installed

 

11/15/2019

teton

PSMC

psmc

1.0.0

installed

 

11/12/2019

teton

R

r

3.6.1

updated

Built with intel compiler and MKL

11/05/2019

teton

R

r

3.6.1

updated

 

10/31/2019

teton

DENISE-SH

denise-sh

1.0.0

installed

 

10/11/2019

teton

MUMmer

mummer

4.0.0

installed

 

10/10/2019

teton

Kraken

kraken

2.0.8

updated

 

9/26/2019

teton

RAY

ray

2.3.1

installed

 

9/23/2019

teton

CGAL

cgal

4.6.3

installed

Built with gcc 7.3.0

9/19/2019

teton

SAVA

sava

1.0

installed

 

9/18/2019

teton

DENISE - SH

denise

1.3

installed

 

9/17/2019

teton

FFTW

fftw

3.3.8-impi

updated

Built with intel/18.0.1 and intel-mpi/2018.2.199

9/16/2019

teton

BarraCUDA

barracuda

0.7.0

installed

 

9/13/2019

teton

GPU-Blast

gpu-blast

1.1

installed

 

9/12/2019

teton

MLST

mlst

2.0.4

installed