Software Update Log
- Abigail Smith (Unlicensed)
- Simon Alexander
- Joshua Cook (Unlicensed)
- TLBrewer
Update Log
When loading a module we recommend always defining the version you require, and not relying on what you think the default version might be. View the 'Which Software Version' section for instructions on how to discover available versions.
Date | Cluster | Application/Library | Module Name | Version | Action | Notes |
|---|---|---|---|---|---|---|
09/13/2022 | teton | samtools | 1.16.1 | updated |
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09/13/2022 | teton | bcftools | bcftools | 1.16 | updated | Part of the Samtools suite of tools. |
09/13/2022 | teton | htslib | htslib | 1.16 | updated | Part of the Samtools suite of tools. |
09/01/2022 | teton | fftw | 3.3.10 | installed | Built with Nvidia HPC SDK 22.7. | |
08/22/2022 | teton | nvidia/hpc-sdk | 22.7 | updated | Built with CUDA 11.7 support. | |
08/22/2022 | teton | cuda | 11.7.1 | updated | Built with: gcc/11.2.0 | |
08/10/2022 | teton | wannier90 | 3.1.0 | installed | Built with: gcc/11.2.0 openmpi/4.1.2 netlib-lapack/3.9.1 and openblas/0.3.18 | |
08/10/2022 | teton | lammps | 20220623 | updated | Additional packages: ADIOS, ATC, DIFFRACTION, KSPACE, MANYBODY, MEAM, MOLECULE, REAXFF, REPLICA, RIGID, and VORONOI | |
8/8/2022 | teton | eddyproengine | 7.0.9 | installed |
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7/13/2022 | wildiris | gentools | 1.0.0 | installed | A collection of the following packages: blobtools, bedtools, canu, filtlong, masurca, medaka, miniasm, minimap2, NanoPlot, pilon, porechop, racon, tabview | |
7/13/2022 | teton | tesseract | 4.1.1 | installed |
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7/7/2022 | teton | fftw | 3.3.10 | updated | Built with gcc/11.2.0 and openmpi/4.1.2 | |
6/9/2022 | wildiris | trimmomatic | 0.40 | installed |
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6/9/2022 | wildiris | quast | 5.0.2 | installed |
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6/9/2022 | wildiris | orthofinder | 2.5.4 | installed |
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6/9/2022 | wildiris | multiqc | 1.12 | installed |
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6/9/2022 | teton | energyplus | 9.6.0 | installed |
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6/9/2022 | wildiris | busco | 5.3.2 | installed |
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6/9/2022 | wildiris | blobtools2 | 3.1.5 | installed |
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6/9/2022 | wildirs | raxml | 8.2.12 | installed |
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5/12/2022 | teton | busco | 5.3.2 | installed |
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5/5/2022 | teton | plink | 1.9 | installed |
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5/5/2022 | teton | matlab | 2022a | updated |
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4/7/2022 | teton | qiime2 | 2022.2 | updated |
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4/1/2022 | teton | matlab | 2021b | installed |
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3/30/2022 | teton | slim | 3.7.1 | updated |
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3/04/2022 | teton | guppy-cpu/guppy-gpu | 6.0.1 | installed |
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2/28/2022 | teton | dftb | 21.1 | installed | Built from a specific tree branch: mdForces | |
2/23/2022 | teton | built by user | 9.0 | details | Details the steps required to build a local version. | |
2/23/2022 | teton | nextflow | 21.10.6 | installed |
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1/22/2022 | teton | Boost: C++ Libraries | boost | 1.78.0 | updated | Built with gcc/11.2.0 |
1/18/2022 | teton | Compiler: GNU GCC | gcc | 11.2.0 | updated |
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1/11/2022 | teton | python | 3.10.1 | updated | With numpy (1.22.2) and pandas (1.4.1) | |
1/7/2022 | teton | packmol | 20.3.3 | installed |
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11/18/2021 | teton | genemark | 4.68 | installed |
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09/28/2021 | teton | DeepLabCut - CPU version | deeplabcut | 2.2.0.2 | installed |
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09/28/2021 | teton | megan | 6.21.12 | installed |
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09/24/2021 | teton | miniconda3 | 4.10.3 | updated |
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09/23/2021 | teton | mafTools, sonLib, pinchesAndCacti | maftools | 0.1 | installed |
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08/25/2021 | teton | HDF5 | hdf5 | 1.12.1 | updated | Versions: gcc/openmpi and intel/intel-mpi |
08/25/2021 | teton | singularity | 3.8.1 | updated |
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08/19/2021 | teton | N/A | 5.5.0 | installed | Instructions to install locally. | |
08/09/2021 | teton | lammps | 20210809 | updated | Additional packages: KSPACE, MANYBODY, MOLECULE, RIGID, REPLICA, USER-ADIOS, USER-ATC, USER-DIFFRACTION, USER-MEAMC, USER-REAXC and VORONOI | |
06/15/2021 | teton | angsd | 0.935 | installed |
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06/15/2021 | teton | samtools | 1.12 | updated |
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06/15/2021 | teton | htslib | 1.12 | updated |
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06/03/2021 | teton | sourcetracker2 | 2.0.1 | installed |
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05/07/2021 | teton | qiime2 | 2021.4 | updated |
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03/12/2021 | teton | spades | 3.15.2 | updated |
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02/19/2021 | loren | libs/itk/5.1.2 | 5.1.2 | updated |
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02/19/2021 | loren | libs/vtk/8.2.0 | 8.2.0 | updated |
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02/12/2021 | teton | trees | 3 | installed |
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01/22/2021 | teton | vsearch | 2.15.1 | updated |
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01/16/2021 | teton | kentutils | 1.04.0 | installed |
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15/01/2021 | teton | paraview | 5.8.1 | installed |
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01/05/2021 | loren | apps/paraview/5.8.1 | 5.8.1 | updated |
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12/16/2020 | teton | htseq | 0.12.4 | updated |
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11/16/2020 | loren | apps/avizo | 2020.02 | installed |
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11/16/2020 | loren | apps/pergeos | 2019.04 | installed |
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11/09/2020 | teton | opensmoke | 0.11.0 | installed |
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11/02/2020 | teton | quantum-espresso | 6.6 | installed | Uses intel and intel-mpi | |
10/28/2020 | teton | dftb | 20.1 | installed |
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10/14/2020 | teton | cutadapt | 2.10 | updated |
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10/08/2020 | teton | built by user |
| details | Master branch as off 10/08/2020 Instructions on how to build MOOSE on teton, using the petsc/3.11.4 module. | |
10/01/2020 | teton | lammps | 20201001 | updated | Additional packages: KSPACE, MANYBODY, MOLECULE, RIGID, REPLICA, USER-ADIOS, USER-ATC, USER-MEAMC, USER-REAXC and VORONOI | |
09/01/2020 | teton | qiime2 | 2020.8 | updated | With q2-aldex2 plugin | |
07/31/2020 | teton | gatk | 4.1.8.0 | updated |
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07/01/2020 | teton | r | 4.0.2 | updated | Built with intel compiler and MKL | |
06/24/2020 | teton | r | 4.0.2 | updated | Built with gcc/7.3.0 | |
6/22/2020 | teton | qiime2 | 2020.2b | updated | With q2-aldex2 plugin | |
6/18/2020 | teton | qiime2 | 2020.2 | updated |
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03/25/2020 | teton | blast-plus | 2.10.0 | updated |
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03/25/2020 | teton | lammps | 20200324 | updated | Added package RIGID | |
03/10/2020 | teton | snopt | 7.2.13 | installed |
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03/05/2020 | teton | lammps | 20200305 | updated | Added packages KSPACE and CPM | |
02/28/2020 | teton | lammps | 20200227 | updated | added packages: MANYBODY, VORONOI, USER-ATC, USER-MEAMC and USER-ADIOS | |
02/13/2020 | teton | p7zip | p7zip/16.02 | installed |
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02/07/2020 | teton | qiime2 | 2019.10 | updated |
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02/05/2020 | teton | lammps | 20190807 | updated | LAMMPS (7 Aug 2019) with packages: MOLECULE and USER-REAXC | |
01/17/2020 | teton | modeltest | 0.1.6 | installed |
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01/07/2020 | teton | ensembl-vep | 98.3 | installed |
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12/10/2019 | teton | jdk | 11.0.5 | updated |
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11/15/2019 | teton | rohan | 1.0.0 | installed |
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11/15/2019 | teton | psmc | 1.0.0 | installed |
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11/12/2019 | teton | r | 3.6.1 | updated | Built with intel compiler and MKL | |
11/05/2019 | teton | r | 3.6.1 | updated |
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10/31/2019 | teton | denise-sh | 1.0.0 | installed |
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10/11/2019 | teton | mummer | 4.0.0 | installed |
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10/10/2019 | teton | kraken | 2.0.8 | updated |
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9/26/2019 | teton | ray | 2.3.1 | installed |
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9/23/2019 | teton | cgal | 4.6.3 | installed | Built with gcc 7.3.0 | |
9/19/2019 | teton | sava | 1.0 | installed |
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9/18/2019 | teton | denise | 1.3 | installed |
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9/17/2019 | teton | fftw | 3.3.8-impi | updated | Built with intel/18.0.1 and intel-mpi/2018.2.199 | |
9/16/2019 | teton | barracuda | 0.7.0 | installed |
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9/13/2019 | teton | gpu-blast | 1.1 | installed |
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9/12/2019 | teton | mlst | 2.0.4 | installed |
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