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  • ARCC has a version of the related BLAST database installed on Teton and WilidIirs that is configured so that blast knows where to look for it (so you don't have to worry about this).

  • Due to the reasonably dynamic nature of this database, ARCC does have a method to update this database on request.

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  • Blast database last updated: 20210422

Here is a list of the current databases on Teton:

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Teton

WildIris

Last updated: 20210422

Last updated: 20220312

Code Block
Connected to NCBI
16S_ribosomal_RNA
18S_fungal_sequences
28S_fungal_sequences
Betacoronavirus
ITS_RefSeq_Fungi
ITS_eukaryote_sequences
LSU_eukaryote_rRNA
LSU_prokaryote_rRNA
SSU_eukaryote_rRNA
cdd_delta
env_nr
env_nt
human_genome
landmark
mito
mouse_genome
nr
nt
pataa
patnt
pdbaa
pdbnt
ref_euk_rep_genomes
ref_prok_rep_genomes
ref_viroids_rep_genomes
ref_viruses_rep_genomes
refseq_protein
refseq_rna
refseq_select_prot
refseq_select_rna
swissprot
taxdb
tsa_nr
tsa_nt
Code Block
Connected to NCBI
16S_ribosomal_RNA
18S_fungal_sequences
28S_fungal_sequences
Betacoronavirus
ITS_RefSeq_Fungi
ITS_eukaryote_sequences
LSU_eukaryote_rRNA
LSU_prokaryote_rRNA
SSU_eukaryote_rRNA
env_nt
env_nr
human_genome
landmark
mito
mouse_genome
nr
nt
pataa
patnt
pdbaa
pdbnt
ref_euk_rep_genomes
ref_prok_rep_genomes
ref_viroids_rep_genomes
ref_viruses_rep_genomes
refseq_select_rna
refseq_select_prot
refseq_protein
refseq_rna
swissprot
tsa_nr
tsa_nt
taxdb

Version: 2.6.10

Since the last update of the database, version 2.6.0 is no longer compatible with this database. If you try running blastp with this version, you will see the following error message:

Code Block
languagepy
BLAST Database error: Error: Not a valid version 4 database.

Basic Batch Script

Code Block
languagepy
#!/bin/bash
#SBATCH --job-name blastp
#SBATCH --nodes=1
#SBATCH --cpus-per-task=16
#SBATCH --time=24:00:00
#SBATCH --account=<your account>

module load swset/2018.05 gcc/7.3.0
module load blast-plus/2.10.0-py27

srun blastp <add input files and configuration>