Software

1 Overview | 2 Software | 3 Which Software Version | 4 ARCC Tools | 5 Available Shells on MedicineBow

Overview

This Wiki section contains information about the software used for research and/or run on ARCC’s clusters at UWyo. It provides short examples, tips, best practices, and information on running the software. Installed software applications, officially supported libraries and drives, official support tools, and available shells are described as well. It is not intended to be a full reference guide.

You can refer to the MedicineBow Software List and Loren Software pages for a quick glance of what is available across these clusters.

If you have difficulty using any of this software please feel free to get in touch with us at arcc-help@uwyo.edu. If you require a new application, or an update to an existing application, please following the guidelines on the Requesting Software page.

Software

Compilers
Software: Lmod
Software: Slurm
- Slurm: Jobs and Nodes
Installing Software Yourself on HPC Cluster
- Using Miniconda to Install Software
- Apptainer (formally Singularity)
File Editors

Which Software Version

To find the available versions for any software please use: module spider <module-name>
For example:

[]$ module spider gaussian
---------------------------------------------------------------------------------------------------------------------------------
  gaussian:
---------------------------------------------------------------------------------------------------------------------------------
     Versions:
        gaussian/16.AVX.b01
        gaussian/16.AVX2.b01
        gaussian/103

From the presented list, can then find details on a specific version:

[]$ module spider gaussian/16.AVX2.b01
---------------------------------------------------------------------------------------------------------------------------------
  gaussian: gaussian/16.AVX2.b01
---------------------------------------------------------------------------------------------------------------------------------
    Properties:
      Chemistry related software

    This module can be loaded directly: module load gaussian/16.AVX2.b01

ARCC Tools

Tool Name	Default Version	Module Load Command	Tool Description

Tool Name	Default Version	Module Load Command	Tool Description
arccjobs	1.0	automatic	Prints a table showing active projects and jobs
arccinfo	1.0	automatic	Prints information about a user
pestat		automatic	Prints a nodes list with allocated jobs
showpartitions		automatic	Prints a partition list with node information

Available Shells on MedicineBow

Teton has several shells available for use. The default is bash. To change your default shell, please submit the request through standard ARCC request methods.

Shell	Path	Version	Notes

Shell	Path	Version	Notes
bash	/bin/bash	5.1.8	Recommended
zsh	/bin/zsh	5.8
csh	/bin/csh	6.22.03	Implemented by TCSH
tcsh	/bin/tcsh	6.22.03