...
Use the module name fastqc
to discover versions available and to load the application.
Multicore
According to the fastqc --help
documentation:
Code Block |
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-t --threads Specifies the number of files which can be processed
simultaneously. Each thread will be allocated 250MB of
memory so you shouldn't run more threads than your
available memory will cope with, and not more than
6 threads on a 32 bit machine |
So, only request as many cores as files you are processing. Example:
...
The fastqc
command can be ran with multiple threads, see the fasqc --help
for more details on the --threads
option.