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Code Block
FUNGAP_DIR=/workspace/FunGAP
fungap python $FUNGAP_DIR/fungap.py

# Results in:
usage: fungap.py -g <genome_assembly> -12UA <trans_read_files> -o <output_dir> -a <augustus_species> -b <busco_dataset> -s <sister_proteome>
fungap.py: error: the following arguments are required: -g/--genome_assembly, -a/--augustus_species, -b/--busco_dataset, -s/--sister_proteome

This is a very domain specific application and ARCC have only been able to perform limited testing.

If you come across any issues please submit a help request, making sure to provide details on the exact command you’re calling AND where we can get all necessary data to replicate the issue.