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Use gatk --list to get a list of tools installed with that version of gatk.
Multicore
To confirm if a particular gatk tool allows the definition of multiple cores see gatk tool_name --helpTools built with Spark are capable of running with multiple cores. Tools built with Spark have Spark at the end of the tool name. For a full list of the tools that come with GATK please refer to the output of running gatk --list.
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Note: Although ARCC happily takes responsibility for setting up, installing, and testing the software it is running, this is a very feature-rich application and we are unable to test every feature and all the parameter settings. To assist us, and other users, we would sincerely appreciate feedback from users that we can share with the wider research community. |
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