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This page will suggest how to use locally and what ARCC infrastructure has provided to make using the provided pipelines more convenient.

Why Locally?

• We have noticed during testing, that some of the provided scripts appear to require access and write to some internal child folders. This could potentially affect multiple users running concurrently from the same RoseTTAFold folder.

• The provided pipeline scripts assume they are being running from within the RoseTTAFold install location.

Getting Started

Within your home or project folder, you will need to clone the main git repository and install the csblast and lddt dependencies:

# Clone python related scripts.
[@blog2 testing]$ git clone https://github.com/RosettaCommons/RoseTTAFold.git
[@blog2 testing]$ cd RoseTTAFold/
# Install csblast and lddt applications.
[@blog2 RoseTTAFold]$ ./install_dependencies.sh

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