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Running maker -CTL will generate a file with the following paths:
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| title | BeartoothLBeartooth: maker_exe.ctl |
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#-----Location of Executables Used by MAKER/EVALUATOR
makeblastdb=/apps/u/spack/gcc/12.2.0/blast-plus/2.13.0-5zhb232/bin/makeblastdb #location of NCBI+ makeblastdb executable
blastn=/apps/u/spack/gcc/12.2.0/blast-plus/2.13.0-5zhb232/bin/blastn #location of NCBI+ blastn executable
blastx=/apps/u/spack/gcc/12.2.0/blast-plus/2.13.0-5zhb232/bin/blastx #location of NCBI+ blastx executable
tblastx=/apps/u/spack/gcc/12.2.0/blast-plus/2.13.0-5zhb232/bin/tblastx #location of NCBI+ tblastx executable
formatdb= #location of NCBI formatdb executable
blastall= #location of NCBI blastall executable
xdformat= #location of WUBLAST xdformat executable
blasta= #location of WUBLAST blasta executable
prerapsearch= #location of prerapsearch executable
rapsearch= #location of rapsearch executable
RepeatMasker=/apps/u/opt/gcc/12.2.0/repeatmasker/4.1.3/RepeatMasker #location of RepeatMasker executable
exonerate=/apps/u/spack/gcc/12.2.0/exonerate/2.4.0-4d3tjyb/bin/exonerate #location of exonerate executable
#-----Ab-initio Gene Prediction Algorithms
snap=/apps/u/opt/gcc/12.2.0/snap-korf/20221106/snap #location of snap executable
gmhmme3= #location of eukaryotic genemark executable
gmhmmp= #location of prokaryotic genemark executable
augustus= #location of augustus executable
fgenesh= #location of fgenesh executable
evm= #location of EvidenceModeler executable
tRNAscan-SE= #location of trnascan executable
snoscan= #location of snoscan executable
#-----Other Algorithms
probuild= #location of probuild executable (required for genemark) |
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