Page Comparison

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Workshop:

• Date: 10/23/2023:

• Title: Created for the Tools for Single-Cell Genomics Analysis Workshops. Part 1: Single-Cell RNA Sequencing Data Analysis

• Presenter: Dr Qian-Quan Sun

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This environment can be used on:

1. Beartooth command-line terminal.

2. SouthPass within a Shell tab.

3. SouthPass within an interactive desktop (4 cpus and 16G) within a terminal - this does not require an salloc as the session is already on a compute node.

4. Beartooth command-lineSouthPass interactive desktop (4 cpus and 16G) within RStudio - this does not require an salloc as the session is already on a compute node.

How to Use

From a terminal:

# Create an interactive session so you're not running on a login node.
[~]$ salloc -A <account> arcc -t <time_required> --mem=16G
# Navigate to location of the R script to run.
[~]$ cd <r<script_script_location>
[]$ module load workshop/r4_seurat
[]$ Rscript Rscript <script>.R

From a SouthPass interactive desktop (4 cpus and 16G) running R:tudio

# Start an interactive desktop session.
# Open a terminal.
[]$ module load workshop/r4_seurat
[]$ module load rstudio/2023.9.0
[]$ rstudio