...
| Expand |
|---|
| title | Available Folding Related Commands |
|---|
|
| Code Block |
|---|
2to3 env_parallel.ksh h2ph h5repack lzless perlivp pydoc3.7 streamzip x86_64-conda_cos7-linux-gnu-ld
2to3-3.7 env_parallel.mksh h2xs h5repart lzma perlthanks python tabs x86_64-conda-linux-gnu-ld
acountry env_parallel.pdksh h52gif h5stat lzmadec piconv python3 tclsh xsubpp
adig env_parallel.sh h5c++ h5unjam lzmainfo pip python3.7 tclsh8.6 xz
ahost env_parallel.tcsh h5cc h5watch lzmore pip3 python3.7-config tensorboard xzcat
captoinfo env_parallel.zsh h5clear idle3 markdown_py pl2pm python3.7m tflite_convert xzcmp
clear f2py h5copy idle3.7 matplotlib pod2html python3.7m-config tf_upgrade_v2 xzdec
corelist f2py3 h5debug infocmp ncursesw6-config pod2man python3-config tic xzdiff
cpan f2py3.7 h5diff infotocap niceload pod2text pyvenv toco xzegrep
c_rehash fftwf-wisdom h5dump instmodsh openssl pod2usage pyvenv-3.7 toco_from_protos xzfgrep
enc2xs fftwl-wisdom h5fc json_pp parallel podchecker reset toe xzgrep
encguess fftw-wisdom h5format_convert libnetcfg parcat protoc saved_model_cli tput xzless
env_parallel fftw-wisdom-to-conf h5import lzcat parset prove sem tset xzmore
env_parallel.ash freeze_graph h5jam lzcmp parsort ptar shasum unlzma zipdetails
env_parallel.bash gdbm_dump h5ls lzdiff perl ptardiff splain unxz
env_parallel.csh gdbm_load h5mkgrp lzegrep perl5.34.0 ptargrep sql wheel
env_parallel.dash gdbmtool h5perf_serial lzfgrep perlbug pydoc sqlite3 wish
env_parallel.fish gif2h5 h5redeploy lzgrep perldoc pydoc3 sqlite3_analyzer wish8.6 |
|
This conda environment provides access to the pyrosetta python package:
| Code Block |
|---|
[]$ module load miniconda3/23.1.0
[]$ module load rosettafold/1.1.0
[]$ conda activate /apps/u/opt/conda-envs/rosettafold/1.1.0/Folding
(/apps/u/opt/conda-envs/rosettafold/1.1.0/Folding) []$ python
Python 3.7.16 (default, Jan 17 2023, 22:20:44)
[GCC 11.2.0] :: Anaconda, Inc. on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import pyrosetta
>>> |
Provided pipeline script updates
...
| Code Block |
|---|
CPU="8" # number of CPUs to use
MEM="64" # max memory (in GB) |
The These are then past as arguments into the commands called within the script.
...