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| Code Block |
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#SBATCH --nodes=4 #SBATCH --ntasks-per-node=8 |
On Teton run the following:
| Code Block |
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mpiexec -n 32 maker |
With the value after the -n option equaling the number of nodes multiplied by the number of tasks (4 x 8 = 32).
On Beartooth, simply run use:
| Code Block |
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srun maker |
On Teton use:
| Code Block |
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mpiexec -n 32 maker |
Memory Issues
Memory is always an issue with any form of bioinformatics analysis, and there are no straight forward recommendations we can make. As a researcher you’ll need to track the size of your data sets, the type of analysis, and the resources you’ve requested and how efficiently they’ve been used.
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