Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Use the module name prokka to discover versions available and to load the application.

Multicore

The prokka command can run using multiple cores, please see the --cpus option from calling prokka -h for more details.

From our observations, you need to explicitly set this value to utilize all the cpus-per-task that you request. For example:

Code Block
[]$ salloc -A <project-name> -t 1:00:00 -c 16
...
[]$ prokka <filename>.fasta --compliant --cpus 16