Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Expand
titleAvailable Folding Related Commands
Code Block
2to3               env_parallel.ksh     h2ph              h5repack   lzless            perlivp     pydoc3.7           streamzip         x86_64-conda_cos7-linux-gnu-ld
2to3-3.7           env_parallel.mksh    h2xs              h5repart   lzma              perlthanks  python             tabs              x86_64-conda-linux-gnu-ld
acountry           env_parallel.pdksh   h52gif            h5stat     lzmadec           piconv      python3            tclsh             xsubpp
adig               env_parallel.sh      h5c++             h5unjam    lzmainfo          pip         python3.7          tclsh8.6          xz
ahost              env_parallel.tcsh    h5cc              h5watch    lzmore            pip3        python3.7-config   tensorboard       xzcat
captoinfo          env_parallel.zsh     h5clear           idle3      markdown_py       pl2pm       python3.7m         tflite_convert    xzcmp
clear              f2py                 h5copy            idle3.7    matplotlib        pod2html    python3.7m-config  tf_upgrade_v2     xzdec
corelist           f2py3                h5debug           infocmp    ncursesw6-config  pod2man     python3-config     tic               xzdiff
cpan               f2py3.7              h5diff            infotocap  niceload          pod2text    pyvenv             toco              xzegrep
c_rehash           fftwf-wisdom         h5dump            instmodsh  openssl           pod2usage   pyvenv-3.7         toco_from_protos  xzfgrep
enc2xs             fftwl-wisdom         h5fc              json_pp    parallel          podchecker  reset              toe               xzgrep
encguess           fftw-wisdom          h5format_convert  libnetcfg  parcat            protoc      saved_model_cli    tput              xzless
env_parallel       fftw-wisdom-to-conf  h5import          lzcat      parset            prove       sem                tset              xzmore
env_parallel.ash   freeze_graph         h5jam             lzcmp      parsort           ptar        shasum             unlzma            zipdetails
env_parallel.bash  gdbm_dump            h5ls              lzdiff     perl              ptardiff    splain             unxz
env_parallel.csh   gdbm_load            h5mkgrp           lzegrep    perl5.34.0        ptargrep    sql                wheel
env_parallel.dash  gdbmtool             h5perf_serial     lzfgrep    perlbug           pydoc       sqlite3            wish
env_parallel.fish  gif2h5               h5redeploy        lzgrep     perldoc           pydoc3      sqlite3_analyzer   wish8.6

This conda environment provides access to the pyrosetta python package:

Code Block
[]$ module load miniconda3/23.1.0
[]$ module load rosettafold/1.1.0
[]$ conda activate /apps/u/opt/conda-envs/rosettafold/1.1.0/Folding
(/apps/u/opt/conda-envs/rosettafold/1.1.0/Folding) []$ python
Python 3.7.16 (default, Jan 17 2023, 22:20:44)
[GCC 11.2.0] :: Anaconda, Inc. on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import pyrosetta
>>>

Provided pipeline script updates

...