R4 and Seurat
Workshop:
Date: 10/23/2023
Title: Created for the Tools for Single-Cell Genomics Analysis Workshops. Part 1: Single-Cell RNA Sequencing Data Analysis
Presenter: Dr Qian-Quan Sun
Environment: Conda environment build with R v4.3.1 and Seurat v4.4.0
This environment can be used on:
SouthPass within a Shell tab.
SouthPass within an interactive desktop (4 cpus and 16G) - this does not require an
sallocas the session is already on a compute node.Beartooth command-line.
How to Use
# Create an interactive session so you're not running on a login node. [~]$ salloc -A <account> arcc -t <time_required> --mem=16G # Navigate to location of the R script to run. [~]$ cd <r_script_location> []$ module load workshop/r4_seurat []$ Rscript Rscript <script>.R
You can not use this environment within RStudio via an interactive desktop session on SouthPass.