WildIris Software

1 Overview | 1.1 containers and virtual envs | 1.2 language | 1.3 libraries and toolkits | 1.4 utility

Overview

Herein, find summaries of each package with links to a more detailed page for each package.
Below is a list of software / applications that are available on WildIris. Click the software title to learn more about a particular software package, including its associated module name to use to find available versions and to load.
Please refer to our LMOD page for information about and how to use the module system:

Last Updated: 08/25/23

application

compiler

GNU

containers and virtual envs

Miniconda

language

C/C++	Fortran	Java
Perl	Python	R

libraries and toolkits

OpenMPI

We haves 100s of libraries and do not have a wiki page for them all. We recommend, once you have access, to perform a module spider to see if it is installed, but not listed above.

utility

Ant

GSUtil

There are 10s of utilities that will be automatically available on the System as part of the OS without needing to load a module: For example: bzip2, curl, tar…
Some utilities will come as part of the system but might have a module with a newer version:

Astral	BCFtools	Beast1
Blast+	Blobtools2	Bowtie2
Bridger	Busco	BWA
FastQC	Gentools	Guppy (CPU)
HISAT2	HTSlib	IQ-Tree
MAFFT	MultiQC	Muscle
OrthoFinder	PLINK	Prokka
Qiime2	QUAST	RAxML
RevBayes	Salmon	Samtools
Shovill	SPades	Stacks
StringTie	Trimmomatic	USearch
VCFtools