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Overview
GitHub: a utility that runs on a
BAMorCRAMfile and generates low-level information about sequencing data at specific nucleotide positions. Its outputs include observed bases, readcounts, summarized mapping and base qualities, strandedness information, mismatch counts, and position within the reads.
Using
Use the module name amber bam-readcount to discover versions available and to load the application.
Multicore
Currently we are not aware that bam-readcount can run using multiple cores.