...
Use the module name plink to discover versions available and to load the application.
Parallelize
Looking at the --help documentation:
| Code Block |
|---|
[]$ plink --help
...
--threads <val> : Set maximum number of concurrent threads.
This has one known limitation: some BLAS/LAPACK linear
algebra operations are multithreaded in a way that PLINK
cannot control. If this is problematic, you should
recompile against single-threaded BLAS/LAPACK.
... |
We would suggest setting this value to the cpus-per-task value you set in your sbatch script or salloc request.