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Overview

  • EddyPro is a powerful open source software application for processing eddy covariance data. It computes fluxes of water vapor (evapotranspiration), carbon dioxide, methane, other trace gases, and energy with the Eddy Covariance method. EddyPro is developed, maintained and supported by LI‑COR Biosciences. It originates from ECO2S, the Eddy COvariance COmmunity Software project, which was developed as part of the Infrastructure for Measurement of the European Carbon Cycle (IMECC-EU) research project. We gratefully acknowledge the IMECC consortium, the ECO2S development team, the University of Tuscia (Italy) and scientists around the world who assisted with development and testing of the original version of this software.

  • Sample datasets for EddyPro Engine can be found here.

Using

Use the module name eddyproengineto discover versions available and to load the application.

Use eddyproengine_rp --help or eddyproengine_fcc --help to learn more.

To run on EddyPro Engine on the cluster, the folders tmp and output need to be created inside of the directory that contains the project file.

Multicore

Currently, there does not appear to be any documentation that demonstrates that eddyproenginecan run in a parallel fashion over multiple cores/nodes. So, only request a single node and core when using.

GUI

The GUI version of EddyPro is not available on the cluster because it is a fork of the main project and is of an older version.

The GUI version of EddyPro download to download for Windows and Mac OS from here.

Create projects on Alcova or create projects locally and upload to the cluster.

If using on the Windows version or if uploading a project created locally then project file will need to be edited in a text editor to update the pathing.

Editing Project Paths

The following is an example of the pathing set in the project file after creating a project using the Windows GUI version of EddyPro on Alcova:

file_name=//alcova.arcc.uwyo.edu/project/<your_project>/<eddypro_project_example>/<project_name>.eddypro
out_path=//alcova.arcc.uwyo.edu/project/<your_project>/<eddypro_project_example>/output
data_path=//alcova.arcc.uwyo.edu/project/<your_project>/<eddypro_project_example>/<directory_of_data>

To use on Linux this needs to be edited to:

file_name=/alcova/<your_project>/<eddypro_project_example>/<project_name>.eddypro
out_path=/alcova/<your_project>/<eddypro_project_example>/output
data_path=/alcova/<your_project>/<eddypro_project_example>/<directory_of_data>

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