Overview
FunGAP: Fungal Genome Annotation Pipeline. FunGAP performs gene prediction on given genome assembly and RNA-seq reads.
Using
Use the module name fungap to discover versions available and to load the application.
FunGAP has been built as a Singularity image, so after loading the module and running the fungap command, you're actually starting the container image within which you call the related commands. For example:
Starting FunGAP:
[]$ module load fungap/1.1.1 []$ fungap Singularity> Singularity> python /workspace/FunGAP/get_augustus_species.py --genus_name "Saccharomyces" --email_address my.address5@uwyo.edu Validating input genus name... ...
This is a very domain specific application and ARCC have only been able to perform limited testing.
If you come across any issues please submit a help request, making sure to provide details on the exact command you’re calling AND where we can get all necessary data to replicate the issue.