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Last Updated: 9/26/24

application

Astral

Bam-countread

Bcftools

Beast1

Beast2

Blast

Bowtie2

Dorado

Fastp

FastQC

Gaussian & GaussView

Guppy (CPU)

Guppy (GPU)

Hisat2

IDL

IQ-Tree

MAFFT

MATLAB

MultiQC

Muscle

Nextflow

ParaView

Picard

Qiime2

RegTools

RSeQC

Samtools

SPAdes

Subread

TopHat

Trimmomatic

compiler

GNU

Intel oneAPI

NVidia HPC SDK

containers and virtual envs

Miniconda

Singularity

ide

PyCharm

RStudio

language

C/C++

Fortran

Go

Java

Julia

Perl

Python2

Python3

R

Rust

library

Adios2

Bison

Boost

Cairo

CGAL

CGNS

Cuda

Eigen

ELPA

FFTW

GDAL

GEOS

GSL

HDF5

HYPRE

ICU4C

LAPACK

METIS

MPFR

NCURSES

NetCDF-C

NetCDF-CXX

Nettle

OpenBLAS

OpenMPI

PARMETIS

PCRE2

PETSc

Pigz

Pixman

ScaLAPACK

Scotch

Voropp

Wannier90

Zlib

Zolton

  • We haves 10s of libraries and do not have a wiki page for them all. We recommend, once you have access, to perform a module spider to see if it is installed, but not listed above.

toolkit

Bedops

Cuda

SRA-Toolkit

utility

GSUtil

IOR

KentUtils

OSU Micro Benchmarks

Parallel (gnu)

qperf

RClone

stress-ng

  • There are 10s of utilities that will be automatically available on the System as part of the OS without needing to load a module.

  • Some utilities will come as part of the system but might have a module with a newer version