SPAdes

Overview

• SPades: It’s all about the viruses: new coronaSPAdes, rnaviralSPAdes and metaviralSPAdes pipelines.

Using

Use the module name spades to discover versions available and to load the application.

Multicore:

Some of the spades application commands can run across multiple threads:

Please see the help for the specific command for further details e.g. run spades.py / metaviralspades.py from the command line to find more details about the --threads option.

Memory:

As above, look at the commands help for the --memory option.