HISAT2
Overview
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (whole-genome, transcriptome, and exome sequencing data) against the general human population (as well as against a single reference genome).
Using
Use the module name hisat2
to discover versions available and to load the application.
Multicore:
The hisat2
command can run across multiple threads using the --threads
option.
See the help for further details e.g. hisat2
--help
.
hisat-genotype
We also provide this related tool as a module: hisat-genotype
.
The hisatgenotype
command can run across multiple threads using the --threads
option.
See the help for further details e.g. hisatgenotype --help
.
On Beartooth, this was automatically loading with hisat2
.
On MedicineBow, this is now a separate module.