Vcf2gwas
- Simon Alexander
Owned by Simon Alexander, created
Overview
vcf2gwas is a Python-built API for GEMMA, PLINK and bcftools performing GWAS directly from a VCF file as well as multiple post-analysis operations.
Using
Use the module name vcf2gwas to discover versions available and to load the application.
Multicore
The vcf2gwas application allows you to use multiple cores and define memory settings. Run vcf2gwas -h to see available options, specifically looking for the -T and -M flags.