RevBayes
- Simon Alexander
Owned by Simon Alexander, created
Overview
RevBayes: Provides an interactive environment for statistical computation in phylogenetics. It is primarily intended for modeling, simulation, and Bayesian inference in evolutionary biology, particularly phylogenetics. However, the environment is quite general and can be useful for many complex modeling tasks.
Using
Use the module name revbayes to discover versions available and to load the application.
The application can be built in two flavors:
Single node, single core: Uses the command
rb.Multi node, multi tasks per node, single core per task: Built with MPI support via
openmpi. The module version will be post fixed with-ompiand uses the commandrb-mpi.
Multicore
If using the MPI version:
Cluster | Partition | Commands: |
|---|---|---|
WildIris |
| [@wilog01 testing]$ salloc -A arcc -t 1:00:00 -N 2 --tasks-per-node 2 --partition=wildiris
[@wi001 testing]$ mpirun -np 4 rb-mpi
RevBayes version (1.1.1)
Build from () on Thu Dec 29 08:24:59 MST 2022
MPI enabled: using 4 processes.
Visit the website www.RevBayes.com for more information about RevBayes.
RevBayes is free software released under the GPL license, version 3. Type 'license()' for details.
To quit RevBayes type 'quit()' or 'q()'.
> |
|
| [salexan5@wilog01 testing]$ salloc -A arcc -t 1:00:00 -N 2 --tasks-per-node 2 --partition=wildiris-phys
[salexan5@wi005 testing]$ export OMP_NUM_THREADS=1
[salexan5@wi005 testing]$ mpirun --mca btl_tcp_if_include bond0 -np 4 rb-mpi
RevBayes version (1.1.1)
Build from () on Thu Dec 29 08:24:59 MST 2022
MPI enabled: using 4 processes.
Visit the website www.RevBayes.com for more information about RevBayes.
RevBayes is free software released under the GPL license, version 3. Type 'license()' for details.
To quit RevBayes type 'quit()' or 'q()'.
> |