Shovill

Owned by Simon Alexander, created
Last updated: Mar 16, 2022
1 min read
1 Overview | 2 Using

Overview

Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with those too.

  • Assemble bacterial isolate genomes from Illumina paired-end reads.

Using

Use the module name shovill to discover versions available and to load the application.