Title: Beartooth Software List  
Owner: TLBrewer
Creator: TLBrewer Sept 22, 2022
Last Changed by: Simon Alexander Apr 17, 2024
Tiny Link: (useful for email) https://arccwiki.atlassian.net/wiki/x/AYDkYg
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ARCC Wiki (2)
    Page: Beartooth
    Page: Software Migration: Beartooth
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Apr 17, 2024 21:29 Simon Alexander View Changes
Apr 02, 2024 20:59 Simon Alexander View Changes
Mar 08, 2024 15:26 Simon Alexander View Changes
Feb 15, 2024 16:20 Simon Alexander View Changes
Jan 30, 2024 19:52 Simon Alexander  
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External Links (6)
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ARCC Wiki (147)     Page: Sequence Hub CLI
    Page: MSMC2
    Page: NetCDF
    Page: ATAT
    Page: VSEARCH
    Page: Maestro
    Page: Qiime2
    Page: Python
    Page: gsutil
    Page: Ranger
    Page: MOOSE
    Page: HISAT2
    Page: Subversion
    Page: GDAL
    Page: PGDSpider
    Page: Beast2
    Page: NCBI-Datasets-CLI
    Page: EddyPro Engine
    Page: USearch
    Page: CGAL
    Page: Fortran
    Page: LocalColabFold
    Page: GATK
    Page: Bedtools2
    Page: SPades
    Page: ELPA
    Page: OpenBLAS
    Page: cuDNN
    Page: Miniconda
    Page: LDhelmet
    Page: SeqKit
    Page: Trinity
    Page: Snakemake
    Page: PathoFact
    Page: RepeatMasker
    Page: Bedops
    Page: BWA
    Page: SourceTracker2
    Page: Bamtools
    Page: DFTB
    Page: FastQC
    Page: Maker
    Page: CUDA
    Page: Localizer
    Page: RoseTTAFold
    Page: RStudio on the Cluster
    Page: VCFtools
    Page: BayeScan
    Page: ANGSD
    Page: RClone Util
    Page: Exonerate
    Page: Miniforge - Mamba
    Page: SignalP
    Page: Structure
    Page: Ruby
    Page: Intel oneAPI
    Page: Parflow
    Page: Interproscan
    Page: PyCharm
    Page: Rust
    Page: GeneMark-ES Suite
    Page: RAxML
    Page: Brains
    Page: Singularity
    Page: ImageJ
    Page: OpenMPI
    Page: Cmdstan
    Page: Proovread
    Page: GNU Compiler Collection
    Page: Perl
    Page: NCBI-RMBlast
    Page: VASPKIT
    Page: PETSc
    Page: Alphafold
    Page: SLiM
    Page: NCO
    Page: Cell Ranger ATAC
    Page: ImageMagick
    Page: Kallisto
    Page: FASTX-Toolkit
    Page: Samtools
    Page: gnuplot
    Page: R
    Page: Metaxa2
    Page: Packmol
    Page: Vcf2gwas
    Page: Circlator
    Page: Go
    Page: HIFIASM
    Page: Gromacs
    Page: MUMmer4
    Page: BLAST
    Page: Java
    Page: GEOS
    Page: ParaView
    Page: Mafft
    Page: VASP
    Page: Quantum Espresso
    Page: LAMMPS
    Page: SRA-Toolkit
    Page: Picard
    Page: Julia
    Page: KentUtils
    Page: Adios2
    Page: Biopython
    Page: Busco
    Page: Blender
    Page: cmake
    Page: IGV
    Page: IPA
    Page: MatLab
    Page: EnergyPlus
    Page: FreeBayes
    Page: Paup
    Page: MFiX
    Page: Ray
    Page: Nextflow
    Page: Bcftools
    Page: CDNest
    Page: FunGAP
    Page: Micromamba
    Page: NVidia HPC SDK
    Page: Star
    Page: Trimmomatic
    Page: GSL
    Page: MultiQC
    Page: Salmon
    Page: Jags
    Page: ORCA
    Page: ant
    Page: IOR
    Page: gffcompare
    Page: HyDe
    Page: BioPerl
    Page: Git
    Page: Rmpi
    Page: Kraken
    Page: Canu
    Page: Cutadapt
    Page: Prodigal
    Page: IQ-Tree
    Page: Clustal Omega
    Page: FileZilla
    Page: HTSeq
    Page: StringTie
    Page: Augustus
    Page: PAPI